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Showing 33 results

Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature

Author

Holtz, Andrew; Van Weyenbergh, Johan; Hong, Samuel L.; Cuypers, Lize; O'Toole, Áine Niamh; Dudas, Gytis; Gerdol, Marco; Potter, Barney I.; Ntoumi, Francine; Mapanguy, Claujens Chastel Mfoutou and 32 others

Source

BMC Infectious Diseases

Type

Journal article

Published

10 October 2024
A framework for automated scalable designation of viral pathogen lineages from genomic data

Author

McBroome, Jakob; de Bernardi Schneider, Adriano; Roemer, Cornelius; Wolfinger, Michael T.; Hinrichs, Angie S.; O'Toole, Áine Niamh; Ruis, Christopher; Turakhia, Yatish; Rambaut, Andrew; Corbett-Detig, Russell

Source

Nature Microbiology

Type

Journal article

Published

05 February 2024
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes

Author

Jackson, Ben; O'Toole, Áine Niamh; Rambaut, Andrew; Colquhoun, Rachel M.

Source

Bioinformatics

Type

Journal article

Published

15 September 2023
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Author

Tsui, Joseph; McCrone, John T.; Lambert, Ben C.; Bajaj, Sumali; Inward, Rhys; Bosetti, Paolo; Pena, Rosario Evans; Tegally, Houriiyah; Hill, Verity; Zarebski, Alexander E. and 30 others

Source

Science

Type

Journal article

Published

20 July 2023
Genomics-informed outbreak investigations of SARS-CoV-2 using civet

Author

O'Toole, Áine Niamh; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel M.; Rooke, Stefan; McCrone, John T.; Duggan, Kate; McHugh, Martin P. and 12 others

Source

PLOS Global Public Health

Type

Journal article

Published

09 December 2022
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Author

Hill, Verity; du Plessis, Louis; Peacock, Thomas P.; Aggarwal, Dinesh; Colquhoun, Rachel M.; Carabelli, Alessandro M.; Ellaby, Nicholas; Gallagher, Eileen; Groves, Natalie; Jackson, Ben and 19 others

Source

Virus Evolution

Type

Journal article

Published

26 August 2022
Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Author

McCrone, John T.; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C.; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 30 others

Source

Nature

Type

Journal article

Published

11 August 2022
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Author

Tegally, Houriiyah; Moir, Monika; Everatt, Josie; Giovanetti, Marta; Scheepers, Cathrine; Wilkinson, Eduan; Subramoney, Kathleen; Makatini, Zinhle; Moyo, Sikhulile; Amoako, Daniel G. and 47 others

Source

Nature Medicine

Type

Journal article

Published

27 June 2022
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences

Author

O'Toole, Áine Niamh; Pybus, Oliver G.; Abram, Michael E.; Kelly, Elizabeth J.; Rambaut, Andrew

Source

BMC Genomics

Type

Journal article

Published

11 February 2022
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Author

Aggarwal, Dinesh; Warne, Ben; Jahun, Aminu S.; Hamilton, William L.; Fieldman, Tom; du Plessis, Louis; Hill, Verity; Blane, Beth; Watkins, Emmeline; Wright, Elizabeth and 713 others

Source

Nature Communications

Type

Journal article

Published

08 February 2022