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Showing 11 results

Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules

Author

Lamb, Kieran D.; Luka, Martha M.; Saathoff, Megan; Orton, Richard J.; Phan, My V.T.; Cotten, Matthew; Yuan, Ke; Robertson, David L.

Source

PLoS Computational Biology

Type

Journal article

Published

25 January 2024
Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission

Author

Cotten, Matthew; Phan, My V.T.

Source

iScience

Type

Journal article

Published

17 March 2023
The evolving SARS-CoV-2 epidemic in Africa: insights from rapidly expanding genomic surveillance

Author

Tegally, Houriiyah; San, James E.; Cotten, Matthew; Moir, Monika; Tegomoh, Bryan; Mboowa, Gerald; Martin, Darren P.; Baxter, Cheryl; Lambisia, Arnold W.; Diallo, Amadou and 391 others

Source

Science

Type

Journal article

Published

15 September 2022
Spike protein cleavage-activation in the context of the SARS-CoV-2 P681R mutation: an analysis from its first appearance in lineage A.23.1 identified in Uganda

Author

Lubinski, Bailey; Frazier, Laura E.; Phan, My V.T.; Bugembe, Daniel L.; Cunningham, Jessie L.; Tang, Tiffany; Daniel, Susan; Cotten, Matthew; Jaimes, Javier A.; Whittaker, Gary R.

Source

Microbiology Spectrum

Type

Journal article

Published

29 June 2022
Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: a retrospective genomic study

Author

Agoti, Charles N.; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W.; de Laurent, Zaydah R.; Morobe, John M.; Mburu, Maureen W.; Omuoyo, Donwilliams O.; Ong'era, Edidah M. and 26 others

Source

eLife

Type

Journal article

Published

14 June 2022
Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses

Author

Cotten, Matthew; Robertson, David L.; Phan, My V.T.

Source

Virus Evolution

Type

Journal article

Published

01 October 2021
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

Author

Wilkinson, Eduan; Giovanetti, Marta; Tegally, Houriiyah; San, James E.; Lessells, Richard J.; Cuadros, Diego; Martin, Darren P.; Rasmussen, David A.; Zekri, Abdel-Rahman N.; Sangare, Abdoul K. and 292 others

Source

Science

Type

Journal article

Published

09 September 2021
Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda

Author

Bugembe, Daniel L.; Phan, My V.T.; Ssewanyana, Isaac; Semanda, Patrick; Nansumba, Hellen; Dhaala, Beatrice; Nabadda, Susan; O'Toole, Áine Niamh; Rambaut, Andrew; Kaleebu, Pontiano and 1 other

Source

Nature Microbiology

Type

Journal article

Published

01 August 2021
Genome sequence of a Minacovirus strain from a farmed mink in The Netherlands

Author

Kwok, Kirsty T. T.; de Rooij, Myrna M.T.; Sinartio, Felisita F.; Smit, Lidwien A.M.; Koopmans, Marion P.G.; Phan, My V.T.

Source

Microbiology Resource Announcements

Type

Journal article

Published

01 February 2021
Alternate primers for whole-genome SARS-CoV-2 sequencing

Author

Cotten, Matthew; Bugembe, Daniel L.; Kaleebu, Pontiano; Phan, My V.T.

Source

Virus Evolution

Type

Journal article

Published

01 January 2021