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Showing 38 results

Pathogen genomic surveillance and the AI revolution

Author

Lytras, Spyros; Lamb, Kieran D.; Ito, Jumpei; Grove, Joe; Yuan, Ke; Sato, Kei; Hughes, Joseph; Robertson, David L.

Source

Journal of Virology

Type

Journal article

Published

29 January 2025
Evaluation of risk-based travel policy for the COVID-19 epidemic in Scotland: a population-based surveillance study

Author

McLachlan, Isobel; Huntley, Selene; Leslie, Kirsten; Bishop, Jen; Redman, Christopher; Yebra, Gonzalo; Shabaan, Sharif; Christofidis, Nicolaos; Lycett, Samantha J.; Holden, Matthew T.G. and 4 others

Source

BMJ Open

Type

Journal article

Published

29 November 2024
From a single sequence to evolutionary trajectories: protein language models capture the evolutionary potential of SARS-CoV-2 protein sequences

Author

Lamb, Kieran D.; Hughes, Joseph; Lytras, Spyros; Young, Francesca; Koci, Orges; Herzig, James; Lovell, Simon C,; Grove, Joe; Yuan, Ke; Robertson, David L.

Source

bioRxiv

Type

Journal article

Published

18 September 2024
Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication

Author

Lytras, Spyros; Wickenhagen, Arthur; Sugrue, Elena; Stewart, Douglas G.; Swingler, Simon; Sims, Anna; Jackson Ireland, Hollie; Davies, Emma L.; Ludlam, Eliza M.; Li, Zhuonan and 2 others

Source

PLoS Biology

Type

Journal article

Published

28 November 2023
Evaluating public health effects of risk-based travel policy for the COVID-19 epidemic in Scotland

Author

McLachlan, Isobel; Huntley, Selene; Leslie, Kirsten; Bishop, Jen; Redman, Christopher; Yebra, Gonzalo; Shabaan, Sharif; Christofidis, Nicolaos; Lycett, Samantha J.; Holden, Matthew T.G. and 4 others

Source

medRxiv

Type

Journal article

Published

21 August 2023
Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent

Author

Pascall, David J.; Vink, Elen; Blacow, Rachel; Bulteel, Naomi; Campbell, Alasdair; Campbell, Robyn; Clifford, Sarah; Davis, Christopher; da Silva Filipe, Ana; El Sakka, Noha and 28 others

Source

Journal of Infection

Type

Journal article

Published

01 June 2023
The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: a genomics-based retrospective cohort analysis

Author

Pascall, David J.; Vink, Elen; Blacow, Rachel; Bulteel, Naomi; Campbell, Alasdair; Campbell, Robyn; Clifford, Sarah; Davis, Christopher; da Silva Filipe, Ana; El Sakka, Noha and 27 others

Source

PLoS ONE

Type

Journal article

Published

13 April 2023
The SARS-CoV-2 Spike Protein Mutation Explorer: Using an Interactive Application to Improve the Public Understanding of SARS-CoV-2 Variants of Concern

Author

Iannucci, Sarah; Harvey, William T.; Hughes, Joseph; Robertson, David L.; Poyade, Matthieu; Hutchinson, Edward

Source

Journal of Visual Communication in Medicine

Type

Journal article

Published

14 March 2023
SARS-CoV-2 variant biology immune escape, transmission and fitness

Author

Carabelli, Alessandro M.; Peacock, Thomas P.; Thorne, Lucy G.; Harvey, William T.; Hughes, Joseph; COVID-19 Genomics UK (COG-UK) consortium; Peacock, Sharon J.; Barclay, Wendy S.; de Silva, Thushan I.; Towers, Greg J. and 1 other

Source

Nature Reviews Microbiology

Type

Journal article

Published

18 January 2023
Analysis of antibody neutralisation activity against SARS-CoV-2 variants and seasonal human coronaviruses NL63, HKU1, and 229E induced by three different COVID-19 vaccine platforms

Author

Cantoni, Diego; Siracusano, Gabriel; Mayora-Neto, Martin; Pastori, Claudia; Fantoni, Tobia; Lytras, Spyros; di Genova, Cecilia; Hughes, Joseph; Lopalco, Lucia; Temperton, Nigel

Source

Vaccines

Type

Journal article

Published

27 December 2022